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Giridhar Nandipati / KSOME
BSD 2-Clause "Simplified" LicenseKinetic Simulations of Microstructural Evolution (KSOME) is an on-lattice object kinetic Monte Carlo (OKMC) simulation code designed to study microstructural evolution in materials under irradiation
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Intuitive GUI for manipulating microscope stages, allowing to align crystallographic data with stage coordinates and microscope images. Simulates kinematic diffraction patterns and Kikuchi line patterns.
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Fit event counting histograms.
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OSTI Public / LogJam
GNU General Public License v2.0 or laterA log viewing and filtering tool.
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MATMULT is a benchmark computes the dense matrix multiply, C=A*B using the DotProd and column methods with various levels of inner loop unrolling. The performance is measured and result correctness is checked.
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MOFA-COBRA is a software code for Matlab that performs Multi-Objective Flux Analysis (MOFA), a solving of linear programming problems.
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The MPI Multicore Linktest (LinkTest) measures the aggregate bandwidth from/to a multicore node in a parallel system.
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The MPI Multicore Torus Communications Benchmark (TorusTest) measues the aggegate bandwidth across all six links from/to any multicore node in a logical torus. It can run in wo modi: using a static or a random mapping of tasks to torus locations.
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OSTI Public / Multivariate Gaussian Process Model for Correlated Time Series in R
Apache License 2.0Updated -
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Polisher is a software package designed to facilitate the error correction of an assembled genome using Illumia read data.
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The Profile Interface Generator (PIG) is a tool for loosely coupling applications and performance tools.
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OSTI Public / rogue-example
Lawrence Berkeley National Labs BSD variant licenseExample project for rogue.
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SWIFT is a computer code that is designed to do research level signal analysis on seismic waveforms, including visualization, filtering and measurement. LLNL is using this code, amplitude and global tomography efforts.
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The purpose of this benchmark is to measure the maximal message rate of a single compute node. The first num_cores ranks are expected to reside on the 'core' compute node for which message rate is being tested.
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SGDX / SGDX-GEM
GNU Affero General Public License v3.0Secure Grid Data Exchange – GRIDEON Emergency Management.
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SGDX / SGDX-SGC
GNU Affero General Public License v3.0Secure Grid Data Exchange - Secure Grid Collaboration
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The system implements a flexible and extensible scene graph for the visualization and analysis of scientific information.
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MTIP / spinifel
Lawrence Berkeley National Labs BSD variant licenseApplies the M-TIP algorithm to SPI data.
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