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Created by James Willenbring@jmwilleMaintainer0 of 3 tasks completed0/3 tasks

Build failed at "Built target kokkoskernel"

Created by: lkkevin

Hi,

I am trying to build Trilinos 12.12.1 for Peridigm on CentOS 7.4. The "make -j 2" failed at [59] Built target kokkoskernel. I have been working on this issue for a couple day but could not figure out. Please help. Thanks.

#------ These are the prerequisites that i installed on my VM: -----# boost_1_65_1 , cmake-3.10.0-rc5, hdf5-1.10.1, matio-1.5.11, netcdf-c-4.5.0, openmpi-3.0.0, blas 3.8.0, lapack 3.8.0.

#------ This is the CMakeError.log ------# Performing C++ SOURCE FILE Test HAVE_TEUCHOS_LAPACKLARND failed with the following output: Change Dir: /root/Downloads/trilinos-12.12.1-Source/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/gmake" "cmTC_2fa60/fast" /usr/bin/gmake -f CMakeFiles/cmTC_2fa60.dir/build.make CMakeFiles/cmTC_2fa60.dir/build gmake[1]: Entering directory /root/Downloads/trilinos-12.12.1-Source/build/CMakeFiles/CMakeTmp' Building CXX object CMakeFiles/cmTC_2fa60.dir/src.cxx.o /usr/local/bin/mpicxx -O2 -std=c++11 -pedantic -ftrapv -Wall -Wno-long-long -std=c++11 -DHAVE_TEUCHOS_LAPACKLARND -O3 -DNDEBUG -o CMakeFiles/cmTC_2fa60.dir/src.cxx.o -c /root/Downloads/trilinos-12.12.1-Source/build/CMakeFiles/CMakeTmp/src.cxx /root/Downloads/trilinos-12.12.1-Source/build/CMakeFiles/CMakeTmp/src.cxx: In function ‘int main()’: /root/Downloads/trilinos-12.12.1-Source/build/CMakeFiles/CMakeTmp/src.cxx:12:38: warning: narrowing conversion of ‘0.0’ from ‘double’ to ‘int’ inside { } [-Wnarrowing] int seed[4] = { 0.0, 0.0, 0.0, 1.0 }; ^ /root/Downloads/trilinos-12.12.1-Source/build/CMakeFiles/CMakeTmp/src.cxx:12:38: warning: narrowing conversion of ‘0.0’ from ‘double’ to ‘int’ inside { } [-Wnarrowing] /root/Downloads/trilinos-12.12.1-Source/build/CMakeFiles/CMakeTmp/src.cxx:12:38: warning: narrowing conversion of ‘0.0’ from ‘double’ to ‘int’ inside { } [-Wnarrowing] /root/Downloads/trilinos-12.12.1-Source/build/CMakeFiles/CMakeTmp/src.cxx:12:38: warning: narrowing conversion of ‘1.0e+0’ from ‘double’ to ‘int’ inside { } [-Wnarrowing] Linking CXX executable cmTC_2fa60 /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_2fa60.dir/link.txt --verbose=1 /usr/local/bin/mpicxx -O2 -std=c++11 -pedantic -ftrapv -Wall -Wno-long-long -std=c++11 -DHAVE_TEUCHOS_LAPACKLARND -O3 -DNDEBUG -rdynamic CMakeFiles/cmTC_2fa60.dir/src.cxx.o -o cmTC_2fa60 /usr/local/lib/liblapack.a CMakeFiles/cmTC_2fa60.dir/src.cxx.o: In function main': src.cxx:(.text.startup+0x22): undefined reference to dlarnd_' collect2: error: ld returned 1 exit status gmake[1]: *** [cmTC_2fa60] Error 1 gmake[1]: Leaving directory /root/Downloads/trilinos-12.12.1-Source/build/CMakeFiles/CMakeTmp' gmake: *** [cmTC_2fa60/fast] Error 2

Return value: 1 Source file was:

#define F77_BLAS_MANGLE(name,NAME) name ## _ #define DLARND_F77 F77_BLAS_MANGLE(dlarnd,DLARND) extern "C" { double DLARND_F77(const int* idist, int* seed); } int main() {

const int idist = 1; int seed[4] = { 0.0, 0.0, 0.0, 1.0 }; double val = DLARND_F77(&idist, seed); return (val < 0.0 ? 1 : 0); } Performing C++ SOURCE FILE Test HAVE_CXX_PRAGMA_WEAK failed with the following output: Change Dir: /root/Downloads/trilinos-12.12.1-Source/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/gmake" "cmTC_82e34/fast" /usr/bin/gmake -f CMakeFiles/cmTC_82e34.dir/build.make CMakeFiles/cmTC_82e34.dir/build gmake[1]: Entering directory /root/Downloads/trilinos-12.12.1-Source/build/CMakeFiles/CMakeTmp' Building CXX object CMakeFiles/cmTC_82e34.dir/src.cxx.o /usr/local/bin/mpicxx -O2 -std=c++11 -pedantic -ftrapv -Wall -Wno-long-long -std=c++11 -DHAVE_CXX_PRAGMA_WEAK -O3 -DNDEBUG -o CMakeFiles/cmTC_82e34.dir/src.cxx.o -c /root/Downloads/trilinos-12.12.1-Source/build/CMakeFiles/CMakeTmp/src.cxx Linking CXX executable cmTC_82e34 /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_82e34.dir/link.txt --verbose=1 /usr/local/bin/mpicxx -O2 -std=c++11 -pedantic -ftrapv -Wall -Wno-long-long -std=c++11 -DHAVE_CXX_PRAGMA_WEAK -O3 -DNDEBUG -rdynamic CMakeFiles/cmTC_82e34.dir/src.cxx.o -o cmTC_82e34 CMakeFiles/cmTC_82e34.dir/src.cxx.o: In function main': src.cxx:(.text.startup+0x1c): undefined reference to A::theFunction()' collect2: error: ld returned 1 exit status gmake[1]: *** [cmTC_82e34] Error 1 gmake[1]: Leaving directory /root/Downloads/trilinos-12.12.1-Source/build/CMakeFiles/CMakeTmp' gmake: *** [cmTC_82e34/fast] Error 2

Source file was:

#include

namespace A { // theFunction never gets defined, because we // don't link with a library that defines it. // That's OK, because it's weak linkage. #pragma weak theFunction extern void theFunction (); }

int main() { std::cout << "Hi! I am main." << std::endl; if (A::theFunction != NULL) { // Should never be called, since we don't link // with a library that defines A::theFunction. A::theFunction (); } return 0; }

Determining if the function dggsvd3 exists failed with the following output: Change Dir: /root/Downloads/trilinos-12.12.1-Source/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTC_427b3/fast" /usr/bin/gmake -f CMakeFiles/cmTC_427b3.dir/build.make CMakeFiles/cmTC_427b3.dir/build gmake[1]: Entering directory /root/Downloads/trilinos-12.12.1-Source/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_427b3.dir/CheckFunctionExists.c.o /usr/local/bin/mpicc -DCHECK_FUNCTION_EXISTS=dggsvd3 -O3 -DNDEBUG -o CMakeFiles/cmTC_427b3.dir/CheckFunctionExists.c.o -c /usr/local/share/cmake-3.10/Modules/CheckFunctionExists.c Linking C executable cmTC_427b3 /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_427b3.dir/link.txt --verbose=1 /usr/local/bin/mpicc -DCHECK_FUNCTION_EXISTS=dggsvd3 -O3 -DNDEBUG -rdynamic CMakeFiles/cmTC_427b3.dir/CheckFunctionExists.c.o -o cmTC_427b3 /usr/local/lib/liblapack.a /usr/local/lib/libblas.a CMakeFiles/cmTC_427b3.dir/CheckFunctionExists.c.o: In function main': CheckFunctionExists.c:(.text.startup+0xc): undefined reference to dggsvd3' collect2: error: ld returned 1 exit status gmake[1]: *** [cmTC_427b3] Error 1 gmake[1]: Leaving directory /root/Downloads/trilinos-12.12.1-Source/build/CMakeFiles/CMakeTmp' gmake: *** [cmTC_427b3/fast] Error 2

Determining if the function dggsvd3_ exists failed with the following output: Change Dir: /root/Downloads/trilinos-12.12.1-Source/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/gmake" "cmTC_01e16/fast" /usr/bin/gmake -f CMakeFiles/cmTC_01e16.dir/build.make CMakeFiles/cmTC_01e16.dir/build gmake[1]: Entering directory /root/Downloads/trilinos-12.12.1-Source/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_01e16.dir/CheckFunctionExists.c.o /usr/local/bin/mpicc -DCHECK_FUNCTION_EXISTS=dggsvd3_ -O3 -DNDEBUG -o CMakeFiles/cmTC_01e16.dir/CheckFunctionExists.c.o -c /usr/local/share/cmake-3.10/Modules/CheckFunctionExists.c Linking C executable cmTC_01e16 /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_01e16.dir/link.txt --verbose=1 /usr/local/bin/mpicc -DCHECK_FUNCTION_EXISTS=dggsvd3_ -O3 -DNDEBUG -rdynamic CMakeFiles/cmTC_01e16.dir/CheckFunctionExists.c.o -o cmTC_01e16 /usr/local/lib/liblapack.a /usr/local/lib/libblas.a /usr/bin/ld: /usr/local/lib/liblapack.a(dlaqps.o): undefined reference to symbol 'lround@@GLIBC_2.2.5' /usr/lib64/libm.so.6: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status gmake[1]: *** [cmTC_01e16] Error 1 gmake[1]: Leaving directory /root/Downloads/trilinos-12.12.1-Source/build/CMakeFiles/CMakeTmp' gmake: *** [cmTC_01e16/fast] Error 2

Determining if the function DGGSVD3 exists failed with the following output: Change Dir: /root/Downloads/trilinos-12.12.1-Source/build/CMakeFiles/CMakeTmp Run Build Command:"/usr/bin/gmake" "cmTC_e1f49/fast" /usr/bin/gmake -f CMakeFiles/cmTC_e1f49.dir/build.make CMakeFiles/cmTC_e1f49.dir/build gmake[1]: Entering directory /root/Downloads/trilinos-12.12.1-Source/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_e1f49.dir/CheckFunctionExists.c.o /usr/local/bin/mpicc -DCHECK_FUNCTION_EXISTS=DGGSVD3 -O3 -DNDEBUG -o CMakeFiles/cmTC_e1f49.dir/CheckFunctionExists.c.o -c /usr/local/share/cmake-3.10/Modules/CheckFunctionExists.c Linking C executable cmTC_e1f49 /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_e1f49.dir/link.txt --verbose=1 /usr/local/bin/mpicc -DCHECK_FUNCTION_EXISTS=DGGSVD3 -O3 -DNDEBUG -rdynamic CMakeFiles/cmTC_e1f49.dir/CheckFunctionExists.c.o -o cmTC_e1f49 /usr/local/lib/liblapack.a /usr/local/lib/libblas.a CMakeFiles/cmTC_e1f49.dir/CheckFunctionExists.c.o: In function main': CheckFunctionExists.c:(.text.startup+0xc): undefined reference to DGGSVD3' collect2: error: ld returned 1 exit status gmake[1]: *** [cmTC_e1f49] Error 1 gmake[1]: Leaving directory /root/Downloads/trilinos-12.12.1-Source/build/CMakeFiles/CMakeTmp' gmake: *** [cmTC_e1f49/fast] Error 2

Determining if the function DGGSVD3_ exists failed with the following output: Change Dir: /root/Downloads/trilinos-12.12.1-Source/build/CMakeFiles/CMakeTmp

Run Build Command:"/usr/bin/gmake" "cmTC_6d0e5/fast" /usr/bin/gmake -f CMakeFiles/cmTC_6d0e5.dir/build.make CMakeFiles/cmTC_6d0e5.dir/build gmake[1]: Entering directory /root/Downloads/trilinos-12.12.1-Source/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_6d0e5.dir/CheckFunctionExists.c.o /usr/local/bin/mpicc -DCHECK_FUNCTION_EXISTS=DGGSVD3_ -O3 -DNDEBUG -o CMakeFiles/cmTC_6d0e5.dir/CheckFunctionExists.c.o -c /usr/local/share/cmake-3.10/Modules/CheckFunctionExists.c Linking C executable cmTC_6d0e5 /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_6d0e5.dir/link.txt --verbose=1 /usr/local/bin/mpicc -DCHECK_FUNCTION_EXISTS=DGGSVD3_ -O3 -DNDEBUG -rdynamic CMakeFiles/cmTC_6d0e5.dir/CheckFunctionExists.c.o -o cmTC_6d0e5 /usr/local/lib/liblapack.a /usr/local/lib/libblas.a CMakeFiles/cmTC_6d0e5.dir/CheckFunctionExists.c.o: In function main': CheckFunctionExists.c:(.text.startup+0xc): undefined reference to DGGSVD3_' collect2: error: ld returned 1 exit status gmake[1]: *** [cmTC_6d0e5] Error 1 gmake[1]: Leaving directory /root/Downloads/trilinos-12.12.1-Source/build/CMakeFiles/CMakeTmp' gmake: *** [cmTC_6d0e5/fast] Error 2

#------ This is my build.sh -----#

#!/bin/bash #=========================================================== make clean rm -rf CMake*

cmake
-D CMAKE_INSTALL_PREFIX:PATH=/usr/local/trilinos
-D MPI_BASE_DIR:PATH=/usr/local/lib/openmpi
-D CMAKE_CXX_FLAGS:STRING="-O2 -std=c++11 -pedantic -ftrapv -Wall -Wno-long-long"
-D CMAKE_BUILD_TYPE:STRING=RELEASE
-D Trilinos_WARNINGS_AS_ERRORS_FLAGS:STRING=""
-D Trilinos_ENABLE_ALL_PACKAGES:BOOL=OFF
-D Trilinos_ENABLE_Teuchos:BOOL=ON
-D Trilinos_ENABLE_Shards:BOOL=ON
-D Trilinos_ENABLE_Sacado:BOOL=ON
-D Trilinos_ENABLE_Epetra:BOOL=ON
-D Trilinos_ENABLE_EpetraExt:BOOL=ON
-D Trilinos_ENABLE_Ifpack:BOOL=ON
-D Trilinos_ENABLE_AztecOO:BOOL=ON
-D Trilinos_ENABLE_Amesos:BOOL=ON
-D Trilinos_ENABLE_Anasazi:BOOL=ON
-D Trilinos_ENABLE_Belos:BOOL=ON
-D Trilinos_ENABLE_ML:BOOL=ON
-D Trilinos_ENABLE_Phalanx:BOOL=ON
-D Trilinos_ENABLE_Intrepid:BOOL=ON
-D Trilinos_ENABLE_NOX:BOOL=ON
-D Trilinos_ENABLE_Stratimikos:BOOL=ON
-D Trilinos_ENABLE_Thyra:BOOL=ON
-D Trilinos_ENABLE_Rythmos:BOOL=ON
-D Trilinos_ENABLE_MOOCHO:BOOL=ON
-D Trilinos_ENABLE_TriKota:BOOL=OFF
-D Trilinos_ENABLE_Stokhos:BOOL=ON
-D Trilinos_ENABLE_Zoltan:BOOL=ON
-D Trilinos_ENABLE_Piro:BOOL=ON
-D Trilinos_ENABLE_Teko:BOOL=ON
-D Trilinos_ENABLE_SEACASIoss:BOOL=ON
-D Trilinos_ENABLE_SEACAS:BOOL=ON
-D Trilinos_ENABLE_SEACASBlot:BOOL=ON
-D Trilinos_ENABLE_Pamgen:BOOL=ON
-D Trilinos_ENABLE_EXAMPLES:BOOL=OFF
-D Trilinos_ENABLE_TESTS:BOOL=ON
-D TPL_ENABLE_HDF5:BOOL=ON
-D HDF5_INCLUDE_DIRS:PATH=/usr/local/HDF5/include
-D HDF5_LIBRARY_DIRS:PATH=/usr/local/HDF5/lib
-D TPL_ENABLE_Netcdf:BOOL=ON
-D Netcdf_INCLUDE_DIRS:PATH=/usr/local/netcdf/include
-D Netcdf_LIBRARY_DIRS:PATH=/usr/local/netcdf/lib
-D TPL_ENABLE_MPI:BOOL=ON
-D TPL_ENABLE_BLAS:BOOL=ON
-D TPL_ENABLE_LAPACK:BOOL=ON
-D TPL_ENABLE_Boost:BOOL=ON
-D Boost_INCLUDE_DIRS:PATH=/usr/local/boost/include
-D Boost_LIBRARY_DIRS:PATH=/usr/local/boost/lib
-D BLAS_LIBRARY_NAMES:STRING=libblas.a
-D BLAS_LIBRARY_DIRS:STRING=/usr/local/lib
-D LAPACK_LIBRARY_NAMES:STRING=liblapack.a
-D LAPACK_LIBRARY_DIRS:STRING=/usr/local/lib
-D CMAKE_VERBOSE_MAKEFILE:BOOL=OFF
-D Trilinos_VERBOSE_CONFIGURE:BOOL=OFF
../ #---------------------------------------------------------------------#

@trilinos/

Expectations

Current Behavior

Motivation and Context

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