ShyLU Basker build failure with new CMake changes (#2075) · Issues · James Willenbring / Trilinos

ShyLU Basker build failure with new CMake changes

Created by: ndellingwood

While testing the recent CMake changes discussed in issue #1400 Trilinos fails to build with ShyLU Basker enabled with the following error:

/Users/ndellin/Research/trilinos-dev/Trilinos/packages/amesos2/src/Amesos2_Basker_FunctionMap.hpp:64:41: fatal error: shylubasker_trilinos_decl.hpp: No such file or directory
compilation terminated.

The file above is not being found from the directory Trilinos/packages/shylu/shylu_node/basker/src

@trilinos/kokkos @trilinos/shylu @bartlettroscoe @crtrott @ndellingwood

Expectations

Current Behavior

With the new CMake changes Trilinos fails to build with ShyLU Basker enabled.

Motivation and Context

Trilinos builds with ShyLU Basker enabled on the develop branch without the CMake changes. Xyce uses this package and would be affected by this issue.

Definition of Done

Possible Solution

Steps to Reproduce

Clone Kokkos and checkout the develop branch
Clone Trilinos and checkout the kokkos-promotion branch
Create symbolic link to kokkos in the Trilinos directory; add corresponding line to configure line/file: -DKokkos_SOURCE_DIR_OVERRIDE:STRING=kokkos
Create a build directory and configure Trilinos - my configure script is attached (change the TPL directories if using system installs or SEMS modules)
Build Trilinos - make -j
Observe the error towards the end of compilation pkg: OptiPack%

Configure script:

#!/bin/bash

export SRCDIR=/Users/ndellin/Research/trilinos-dev/Trilinos

TPL_PATH=/Users/ndellin/Research/TPL
BLAS_PATH=${TPL_PATH}/BLAS-3.6.0
LAPACK_PATH=${TPL_PATH}/lapack-3.6.1
SCOTCH_PATH=${TPL_PATH}/scotch_6.0.3

export INSTALL_LOCATION=${PWD}/install

rm -rf CMakeCache.txt CMakeFiles

cmake \
\
-D CMAKE_INSTALL_PREFIX:PATH="${INSTALL_LOCATION}" \
-D CMAKE_CXX_FLAGS:STRING="-DSHYLU_NODEBASKER -g" \
-D CMAKE_MAKE_PROGRAM="make" \
-D CMAKE_BUILD_TYPE:STRING=RELEASE \
-D CMAKE_VERBOSE_MAKEFILE:BOOL=TRUE \
-D BUILD_SHARED_LIBS:BOOL=OFF \
-D Trilinos_VERBOSE_CONFIGURE:BOOL=OFF \
\
-D TPL_ENABLE_MPI:BOOL=ON \
  -D CMAKE_CXX_COMPILER:FILEPATH="`which mpicxx`" \
  -D CMAKE_C_COMPILER:FILEPATH="`which mpicc`" \
  -D CMAKE_Fortran_COMPILER:FILEPATH="`which mpifort`" \
\
-D TPL_ENABLE_ParMETIS:BOOL=OFF \
-D TPL_ENABLE_Scotch:BOOL=ON \
  -D Scotch_INCLUDE_DIRS:PATH="${SCOTCH_PATH}/include" \
  -D Scotch_LIBRARY_DIRS:PATH="${SCOTCH_PATH}/lib" \
  -D Scotch_LIBRARY_NAMES:STRING="scotch;scotcherr" \
-D TPL_ENABLE_BLAS:STRING=ON \
  -D BLAS_LIBRARY_DIRS:FILEPATH=${BLAS_PATH} \
  -D TPL_BLAS_LIBRARIES="-lblas" \
-D TPL_ENABLE_LAPACK:STRING=ON \
  -D LAPACK_LIBRARY_DIRS:FILEPATH=${LAPACK_PATH} \
  -D TPL_LAPACK_LIBRARIES="-llapack" \
\
-D Trilinos_ENABLE_ALL_OPTIONAL_PACKAGES:BOOL=OFF \
-D Trilinos_ENABLE_COMPLEX_DOUBLE:BOOL=ON \
-D Trilinos_ENABLE_DEBUG:BOOL=OFF \
-D Trilinos_ENABLE_EXAMPLES:BOOL=OFF \
-D Trilinos_ENABLE_TESTS:BOOL=OFF \
\
-D Trilinos_ENABLE_Amesos:BOOL=ON \
  -D Amesos_ENABLE_KLU:BOOL=ON \
\
-D Trilinos_ENABLE_CHECKED_STL:BOOL=OFF \
-D Trilinos_ENABLE_OpenMP:BOOL=ON \
-D Trilinos_ENABLE_Kokkos:BOOL=ON \
-D Kokkos_SOURCE_DIR_OVERRIDE:STRING=kokkos \
  -D Kokkos_ENABLE_OpenMP:BOOL=ON \
  -D Kokkos_ENABLE_EXAMPLES:BOOL=OFF \
  -D Kokkos_ENABLE_TESTS:BOOL=OFF \
-D Trilinos_ENABLE_EXPLICIT_INSTANTIATION:BOOL=ON \
-D Trilinos_ENABLE_Epetra:BOOL=ON \
  -D Epetra_ENABLE_EXAMPLES:BOOL=OFF \
  -D Epetra_ENABLE_TESTS:BOOL=OFF \
-D Trilinos_ENABLE_EpetraExt:BOOL=ON \
  -D EpetraExt_ENABLE_EXAMPLES:BOOL=OFF \
  -D EpetraExt_ENABLE_TESTS:BOOL=OFF \
-D Trilinos_ENABLE_Tpetra:BOOL=ON \
  -D Tpetra_ENABLE_EXAMPLES:BOOL=OFF \
  -D Tpetra_ENABLE_TESTS:BOOL=OFF \
-D Trilinos_ENABLE_TeuchosRemainder:BOOL=ON \
-D Trilinos_ENABLE_ShyLU_NodeBasker:BOOL=ON \
  -D ShyLU_NodeBasker_ENABLE_TESTS:BOOL=ON \
  -D ShyLU_NodeBasker_ENABLE_EXAMPLES:BOOL=ON \
-D Trilinos_ENABLE_Amesos2:BOOL=ON \
  -D Amesos2_ENABLE_TESTS:BOOL=ON \
  -D Amesos2_ENABLE_EXAMPLES:BOOL=ON \
  -D Amesos2_ENABLE_TIMERS:BOOL=ON \
  -D Amesos2_ENABLE_KLU2:BOOL=ON \
  -D Amesos2_ENABLE_Basker:BOOL=ON \
${SRCDIR}

Your Environment

Tested on laptop with cmake/3.6.2, gcc/5.4.0 TPLs required: BLAS, LAPACK, Scotch 6.0 (available as SEMS module sems-scotch/6.0.3/nopthread_64bit_parallel)

Relevant repo SHA1s:
Relevant configure flags or configure script:
Operating system and version:
Compiler and TPL versions:

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Additional Information

Compile line preceding the error: cd /Users/ndellin/Research/trilinos-dev/Trilinos/Build/ShyLUBasker/CMakeTest/packages/amesos2/src && /opt/local/bin/mpicxx -I/Users/ndellin/Research/trilinos-dev/Trilinos/Build/ShyLUBasker/CMakeTest -I/Users/ndellin/Research/trilinos-dev/Trilinos -I/Users/ndellin/Research/trilinos-dev/Trilinos/Build/ShyLUBasker/CMakeTest/packages/amesos2/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/amesos2/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/amesos2/src/KLU2/Include -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/amesos2/src/KLU2/Source -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/common/auxiliarySoftware/SuiteSparse/src/AMD/Include -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/common/auxiliarySoftware/SuiteSparse/src/COLAMD/Include -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/common/auxiliarySoftware/SuiteSparse/src/BTF/Include -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/common/auxiliarySoftware/SuiteSparse/src/UFconfig -I/Users/ndellin/Research/trilinos-dev/Trilinos/Build/ShyLUBasker/CMakeTest/packages/epetraext/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/epetraext/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/epetraext/src/transform -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/epetraext/src/inout -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/epetraext/src/coloring -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/epetraext/src/model_evaluator -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/epetraext/src/block -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/epetraext/src/restrict -I/Users/ndellin/Research/trilinos-dev/Trilinos/Build/ShyLUBasker/CMakeTest/packages/epetra/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/epetra/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/Build/ShyLUBasker/CMakeTest/packages/teuchos/kokkoscomm/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/teuchos/kokkoscomm/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/Build/ShyLUBasker/CMakeTest/packages/teuchos/kokkoscompat/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/teuchos/kokkoscompat/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/teuchos/parameterlist/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/teuchos/parser/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/Build/ShyLUBasker/CMakeTest/packages/teuchos/core/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/teuchos/core/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/Build/ShyLUBasker/CMakeTest/kokkos/core/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/kokkos/core/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/teuchos/comm/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/teuchos/remainder/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/Build/ShyLUBasker/CMakeTest/packages/teuchos/remainder/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/teuchos/numerics/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/common/auxiliarySoftware/SuiteSparse/src/CAMD/Include -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/common/auxiliarySoftware/SuiteSparse/src/CCOLAMD/Include -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/common/auxiliarySoftware/SuiteSparse/src/KLU/Include -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/tpetra/core/ext -I/Users/ndellin/Research/trilinos-dev/Trilinos/Build/ShyLUBasker/CMakeTest/packages/tpetra/core/ext -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/tpetra/core/inout -I/Users/ndellin/Research/trilinos-dev/Trilinos/Build/ShyLUBasker/CMakeTest/packages/tpetra/core/inout -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/tpetra/core/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/tpetra/core/src/kokkos_refactor -I/Users/ndellin/Research/trilinos-dev/Trilinos/Build/ShyLUBasker/CMakeTest/packages/tpetra/core/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/tpetra/tsqr/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/Build/ShyLUBasker/CMakeTest/packages/tpetra/tsqr/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/tpetra/classic/LinAlg -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/tpetra/classic/NodeAPI -I/Users/ndellin/Research/trilinos-dev/Trilinos/Build/ShyLUBasker/CMakeTest/packages/tpetra/classic/NodeAPI -I/Users/ndellin/Research/trilinos-dev/Trilinos/Build/ShyLUBasker/CMakeTest/packages/tpetra/classic/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/tpetra/classic/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/Build/ShyLUBasker/CMakeTest/packages/kokkos-kernels/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/kokkos-kernels/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/kokkos-kernels/src/impl -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/kokkos-kernels/src/impl/tpls -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/kokkos-kernels/src/blas -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/kokkos-kernels/src/blas/impl -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/kokkos-kernels/src/sparse -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/kokkos-kernels/src/sparse/impl -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/kokkos-kernels/src/graph -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/kokkos-kernels/src/graph/impl -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/kokkos-kernels/src/batched -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/kokkos-kernels/src/batched/impl -I/Users/ndellin/Research/trilinos-dev/Trilinos/packages/kokkos-kernels/src/common -I/Users/ndellin/Research/trilinos-dev/Trilinos/Build/ShyLUBasker/CMakeTest/kokkos/algorithms/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/kokkos/algorithms/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/Build/ShyLUBasker/CMakeTest/kokkos/containers/src -I/Users/ndellin/Research/trilinos-dev/Trilinos/kokkos/containers/src -pedantic -Wall -Wno-long-long -Wwrite-strings -DSHYLU_NODEBASKER -DBASKER_TIMER -g -std=c++11 -fopenmp -O3 -DNDEBUG -o CMakeFiles/amesos2.dir/Amesos2_Factory.cpp.o -c /Users/ndellin/Research/trilinos-dev/Trilinos/packages/amesos2/src/Amesos2_Factory.cpp