Zoltan & Tpetracore tests failed with MPI (Parallel) - in trilinos installation
Created by: Hostudent
At first, I've to say that I'm really amateur in Unix systems and I'm trying to install trilinos(in order to install peridigm) on my MacBook (OS updated to Mojave) for last 5 days! after all, I could reduce numbers of failed tests to 25, as below. can anyone help me to fix them, please??
The following tests FAILED: 113 - TeuchosComm_Time_test_MPI_1 (Failed) 465 - Zoltan_ch_brack2_3_zoltan_parallel (Failed) 467 - Zoltan_ch_degenerate_zoltan_parallel (Failed) 468 - Zoltan_ch_degenerateAA_zoltan_parallel (Failed) 471 - Zoltan_ch_grid20x19_zoltan_parallel (Failed) 472 - Zoltan_ch_hammond_zoltan_parallel (Failed) 473 - Zoltan_ch_hammond2_zoltan_parallel (Failed) 474 - Zoltan_ch_hughes_zoltan_parallel (Failed) 482 - Zoltan_hg_cage10_zoltan_parallel (Failed) 485 - Zoltan_hg_felix_zoltan_parallel (Failed) 486 - Zoltan_hg_ibm03_zoltan_parallel (Failed) 500 - TpetraCore_gemv_MPI_1 (Failed) 501 - TpetraCore_gemm_m_eq_1_MPI_1 (Failed) 502 - TpetraCore_gemm_m_eq_2_MPI_1 (Failed) 503 - TpetraCore_gemm_m_eq_5_MPI_1 (Failed) 504 - TpetraCore_gemm_m_eq_13_MPI_1 (Failed) 542 - TpetraCore_CrsMatrix_UnitTests_MPI_4 (Failed) 543 - TpetraCore_CrsMatrix_UnitTests2_MPI_4 (Failed) 544 - TpetraCore_CrsMatrix_UnitTests3_MPI_4 (Failed) 545 - TpetraCore_CrsMatrix_UnitTests4_MPI_4 (Failed) 550 - TpetraCore_CrsMatrix_ReplaceDomainMapAndImporter_MPI_4 (Failed) 553 - TpetraCore_CrsMatrix_gaussSeidel_MPI_4 (Failed) 904 - SEACASExodus_exodus_unit_tests_nc5_env (Failed) 1022 - Teko_testdriver_MPI_1 (Failed) 1037 - Teko_ModALPreconditioner_MPI_1 (Failed)
I think that the problem is with open-mpi because before open-mpi, i used mpich and the failed tests were as below:
The following tests FAILED: 113 - TeuchosComm_Time_test_MPI_1 (Failed) 409 - Epetra_BlockMap_test_MPI_4 (Failed) 428 - Epetra_IntSerialDense_test_MPI_1 (Failed) 429 - Epetra_Map_test_MPI_1 (Failed) 440 - Epetra_SimpleLongLongTest_MPI_4 (Failed) 441 - Epetra_BlockMap_test_LL_MPI_4 (Failed) 454 - Epetra_Map_test_LL_MPI_1 (Failed) 500 - TpetraCore_gemv_MPI_1 (Failed) 501 - TpetraCore_gemm_m_eq_1_MPI_1 (Failed) 502 - TpetraCore_gemm_m_eq_2_MPI_1 (Failed) 503 - TpetraCore_gemm_m_eq_5_MPI_1 (Failed) 504 - TpetraCore_gemm_m_eq_13_MPI_1 (Failed) 534 - TpetraCore_CrsGraph_UnitTests0_MPI_4 (Failed) 535 - TpetraCore_CrsGraph_UnitTests1_MPI_4 (Failed) 539 - TpetraCore_CrsGraph_PackUnpack_MPI_1_MPI_1 (Failed) 542 - TpetraCore_CrsMatrix_UnitTests_MPI_4 (Failed) 543 - TpetraCore_CrsMatrix_UnitTests2_MPI_4 (Failed) 544 - TpetraCore_CrsMatrix_UnitTests3_MPI_4 (Failed) 545 - TpetraCore_CrsMatrix_UnitTests4_MPI_4 (Failed) 549 - TpetraCore_CrsMatrix_WithGraph_Serial_MPI_4 (Failed) 550 - TpetraCore_CrsMatrix_ReplaceDomainMapAndImporter_MPI_4 (Failed) 553 - TpetraCore_CrsMatrix_gaussSeidel_MPI_4 (Failed) 559 - TpetraCore_CrsMatrix_MultipleFillCompletes_MPI_4 (Failed) 563 - TpetraCore_CrsMatrix_PackUnpack_MPI_1_MPI_1 (Failed) 567 - TpetraCore_Directory_UnitTests_MPI_4 (Failed) 627 - TpetraCore_MultiVector_UnitTests_MPI_4 (Failed) 661 - EpetraExt_inout_hdf5_test_MPI_4 (Failed) 812 - ML_SelfSmoother_MPI_4 (Failed) 904 - SEACASExodus_exodus_unit_tests_nc5_env (Failed) 940 - Anasazi_Epetra_BlockDavidson_solvertest_MPI_4 (Failed) 951 - Anasazi_Epetra_BKS_solvertest_MPI_4 (Failed) 958 - Anasazi_Epetra_GeneralizedDavidson_solvertest_MPI_4 (Failed) 961 - Anasazi_Epetra_LOBPCG_solvertest_MPI_4 (Failed) 978 - Anasazi_SortManager_test_MPI_4 (Failed) 979 - Anasazi_StatusTest_test_MPI_4 (Failed) 1005 - Stratimikos_test_single_belos_thyra_solver_driver_FourByFour_MPI_1 (Failed) 1006 - Stratimikos_test_single_belos_thyra_solver_driver_nos5_kl190_MPI_1 (Failed) 1007 - Stratimikos_test_single_belos_thyra_solver_driver_nos1_np_MPI_1 (Failed) 1008 - Stratimikos_test_single_belos_thyra_solver_driver_nos1_MPI_1 (Failed) 1009 - Stratimikos_test_single_belos_thyra_solver_driver_nos1_nrhs8_MPI_1 (Failed) 1018 - Stratimikos_test_single_stratimikos_solver_driver_belos_np_MPI_1 (Failed) 1019 - Stratimikos_test_single_stratimikos_solver_driver_belos_ifpack_MPI_1 (Failed) 1020 - Stratimikos_test_single_stratimikos_solver_driver_belos_ml_MPI_1 (Failed) 1021 - Teko_testdriver_MPI_4 (Failed) 1022 - Teko_testdriver_MPI_1 (Failed) 1023 - Teko_testdriver_tpetra_MPI_4 (Failed) 1024 - Teko_testdriver_tpetra_MPI_1 (Failed) 1025 - Teko_IterativePreconditionerFactory_test_MPI_1 (Failed) 1026 - Teko_LU2x2InverseOp_test_MPI_1 (Failed) 1028 - Teko_RequestInterface_test_MPI_1 (Failed) 1029 - Teko_DiagnosticLinearOp_test_MPI_1 (Failed) 1030 - Teko_DiagonallyScaledPreconditioner_MPI_1 (Failed) 1031 - Teko_InverseFactoryOperator_MPI_1 (Failed) 1034 - Teko_StratimikosFactory_MPI_1 (Failed) 1037 - Teko_ModALPreconditioner_MPI_1 (Failed) 1046 - Intrepid_test_Discretization_Basis_HCURL_HEX_I1_FEM_Test_01_MPI_1 (Failed) 1047 - Intrepid_test_Discretization_Basis_HCURL_HEX_In_FEM_Test_01_MPI_1 (Failed) 1049 - Intrepid_test_Discretization_Basis_HCURL_TET_I1_FEM_Test_01_MPI_1 (Failed) 1050 - Intrepid_test_Discretization_Basis_HCURL_WEDGE_I1_FEM_Test_01_MPI_1 (Failed) 1051 - Intrepid_test_Discretization_Basis_HCURL_TRI_I1_FEM_Test_01_MPI_1 (Failed) 1052 - Intrepid_test_Discretization_Basis_HCURL_QUAD_I1_FEM_Test_01_MPI_1 (Failed) 1053 - Intrepid_test_Discretization_Basis_HCURL_QUAD_In_FEM_Test_01_MPI_1 (Failed) 1054 - Intrepid_test_Discretization_Basis_HDIV_HEX_I1_FEM_Test_01_MPI_1 (Failed) 1055 - Intrepid_test_Discretization_Basis_HDIV_HEX_In_FEM_Test_01_MPI_1 (Failed) 1057 - Intrepid_test_Discretization_Basis_HDIV_TET_I1_FEM_Test_01_MPI_1 (Failed) 1058 - Intrepid_test_Discretization_Basis_HDIV_TRI_I1_FEM_Test_01_MPI_1 (Failed) 1059 - Intrepid_test_Discretization_Basis_HDIV_QUAD_I1_FEM_Test_01_MPI_1 (Failed) 1060 - Intrepid_test_Discretization_Basis_HDIV_QUAD_In_FEM_Test_01_MPI_1 (Failed) 1062 - Intrepid_test_Discretization_Basis_HDIV_WEDGE_I1_FEM_Test_01_MPI_1 (Failed) 1065 - Intrepid_test_Discretization_Basis_HGRAD_LINE_Cn_FEM_Test_01_MPI_1 (Failed) 1069 - Intrepid_test_Discretization_Basis_HGRAD_LINE_Hermite_FEM_Test_01_MPI_1 (Failed) 1071 - Intrepid_test_Discretization_Basis_HGRAD_QUAD_C1_FEM_Test_01_MPI_1 (Failed) 1073 - Intrepid_test_Discretization_Basis_HGRAD_QUAD_C2_FEM_Test_01_MPI_1 (Failed) 1075 - Intrepid_test_Discretization_Basis_HGRAD_QUAD_Cn_FEM_Test_01_MPI_1 (Failed) 1077 - Intrepid_test_Discretization_Basis_HGRAD_TRI_C1_FEM_Test_01_MPI_1 (Failed) 1079 - Intrepid_test_Discretization_Basis_HGRAD_TRI_C2_FEM_Test_01_MPI_1 (Failed) 1081 - Intrepid_test_Discretization_Basis_HGRAD_HEX_C1_FEM_Test_01_MPI_1 (Failed) 1083 - Intrepid_test_Discretization_Basis_HGRAD_HEX_C2_FEM_Test_01_MPI_1 (Failed) 1085 - Intrepid_test_Discretization_Basis_HGRAD_HEX_I2_FEM_Test_01_MPI_1 (Failed) 1087 - Intrepid_test_Discretization_Basis_HGRAD_HEX_Cn_FEM_Test_01_MPI_1 (Failed) 1089 - Intrepid_test_Discretization_Basis_HGRAD_TET_C1_FEM_Test_01_MPI_1 (Failed) 1091 - Intrepid_test_Discretization_Basis_HGRAD_TET_C2_FEM_Test_01_MPI_1 (Failed) 1102 - Intrepid_test_Discretization_Basis_HGRAD_WEDGE_C1_FEM_Test_01_MPI_1 (Failed) 1104 - Intrepid_test_Discretization_Basis_HGRAD_WEDGE_C2_FEM_Test_01_MPI_1 (Failed) 1105 - Intrepid_test_Discretization_Basis_HGRAD_WEDGE_I2_FEM_Test_01_MPI_1 (Failed) 1107 - Intrepid_test_Discretization_Basis_HGRAD_PYR_C1_FEM_Test_01_MPI_1 (Failed) 1109 - Intrepid_test_Discretization_Basis_HGRAD_PYR_I2_FEM_Test_01_MPI_1 (Failed) 1118 - Intrepid_test_Discretization_Integration_Test_01_MPI_1 (Failed) 1154 - Intrepid_test_Shared_IntrepidPolylib_Test_01_MPI_1 (Failed) 1156 - Intrepid_test_Shared_PointTools_Test_01_MPI_1 (Failed) 1240 - NOX_Thyra_JFNK_MPI_1 (Failed) 1272 - NOX_Tpetra_1DFEM_MPI_4 (Failed) 1274 - Rythmos_ConvergenceTestHelpers_UnitTest_MPI_1 (Failed) 1277 - Rythmos_ExplicitRK_UnitTest_MPI_1 (Failed) 1279 - Rythmos_ImplicitRK_UnitTest_MPI_1 (Failed) 1280 - Rythmos_IntegratorBuilder_UnitTest_MPI_1 (Failed) 1281 - Rythmos_InterpolationBuffer_UnitTest_MPI_1 (Failed) 1284 - Rythmos_RKButcherTableau_UnitTest_MPI_1 (Failed) 1285 - Rythmos_SinCosModel_UnitTest_MPI_1 (Failed) 1286 - Rythmos_VanderPolModel_UnitTest_MPI_1 (Failed) 1290 - Rythmos_StepperBuilder_UnitTest_MPI_1 (Failed) 1291 - Rythmos_StepperHelpers_UnitTest_MPI_1 (Failed) 1297 - Rythmos_ForwardEulerStepper_UnitTest_MPI_1 (Failed) 1298 - Rythmos_BackwardEulerStepper_UnitTest_MPI_1 (Failed) 1304 - Rythmos_IntegrationObservers_UnitTest_MPI_1 (Failed) 1385 - Stokhos_TpetraCrsMatrixMPVectorUnitTest_Serial_MPI_4 (Failed) 1390 - Piro_MatrixFreeDecorator_UnitTests_MPI_4 (Failed) 1394 - Piro_AnalysisDriverTpetra_MPI_4 (Failed) 1398 - Piro_RythmosSolver_UnitTests_MPI_4 (Failed)
the installed dependecies on my system: all of them installed by homebrew gcc 8.2.0 cmake 3.12.3 openmpi 3.1.3 boost 1.67.0_1 hdf5 1.10.4 netcdf 4.6.1_4
and i should mention that i set all environment variables as recommended!