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  • #47

Closed
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Created Mar 26, 2022 by Iris Chang@ihchangOwner

FSC code not working on Cori

I wasn't able to run the FSC code on Cori by following the instructions on wiki.

(myenv) ihchang@cgpu06:/global/cfs/cdirs/lcls/ihchang/spinifel/spinifel/eval> python fsc.py -m /global/cscratch1/sd/ihchang/spinifel_output/rho-8.mrc -d /global/cfs/cdirs/m2859/data/3iyf/clean/3iyf_dp005_128x128pixels_500k.h5 -p ../../setup/skopi/examples/input/pdb/3iyf.pdb -o /global/cscratch1/sd/ihchang/spinifel_output/eval --zoom 0.6
[1648255885.433943] [cgpu06:74299:0]    ucp_context.c:690  UCX  WARN  transports 'cuda_copy','gdr_copy','cuda_ipc' are not available, please use one or more of: cma, dc, dc_mlx5, dc_x, ib, mm, posix, rc, rc_mlx5, rc_v, rc_verbs, rc_x, self, shm, sm, sysv, tcp, ud, ud_mlx5, ud_v, ud_verbs, ud_x

According @jpblaschke cori gpu is a low priority, it might get fixed, but currently no staff time to maintain this properly.

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