conformation algorithm
@yoon82 @jjdonatelli - To discuss how to implement conformations using softmax which is computed during orientation matching. The code for that is https://gitlab.osti.gov/mtip/spinifel/-/blob/sm/legion-fixes/spinifel/sequential/orientation_matching.py#L126
I've added a method in autocorrelation/merging that can use the result of 'conformation_result'. This currently assumes 'max_likelihood' mode and selects slices/orientations based on whether they belong/don't belong to the current conformation. https://gitlab.osti.gov/mtip/spinifel/-/blob/sm/legion-fixes/spinifel/sequential/autocorrelation.py#L235